{
  "_id": "6a10274cacfb0bcc41c8ff9a",
  "Package": "IsoriX",
  "Version": "0.9.4.9000",
  "Encoding": "UTF-8",
  "Title": "Isoscape Computation and Inference of Spatial Origins using\nMixed Models",
  "Authors@R": "c(\nperson(\"Alexandre\", \"Courtiol\", email = \"alexandre.courtiol@gmail.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-0637-2959\")),\nperson(\"François\", \"Rousset\", role = \"aut\", comment = c(ORCID = \"0000-0003-4670-0371\")),\nperson(\"Marie-Sophie\", \"Rohwaeder\", role = \"aut\"),\nperson(\"Stephanie\", \"Kramer-Schadt\", role = \"aut\", comment = c(ORCID = \"0000-0002-9269-4446\"))\n)",
  "Description": "Building isoscapes using mixed models and inferring the\ngeographic origin of samples based on their isotopic ratios.\nThis package is essentially a simplified interface to several\nother packages which implements a new statistical framework\nbased on mixed models. It uses 'spaMM' for fitting and\npredicting isoscapes, and assigning an organism's origin\ndepending on its isotopic ratio. 'IsoriX' also relies heavily\non the package 'rasterVis' for plotting the maps produced with\n'terra' using 'lattice'.",
  "License": "GPL (>= 2)",
  "LazyData": "true",
  "URL": "https://github.com/courtiol/IsoriX,\nhttps://courtiol-isorix.share.connect.posit.cloud/",
  "BugReports": "https://github.com/courtiol/IsoriX/issues",
  "RoxygenNote": "7.3.3",
  "Roxygen": "list(markdown = TRUE)",
  "Language": "en-GB",
  "Config/pak/sysreqs": "cmake libgdal-dev gdal-bin libgeos-dev libgmp3-dev\nmake libgsl0-dev libjpeg-dev libpng-dev libproj-dev\nlibsqlite3-dev",
  "Repository": "https://courtiol.r-universe.dev",
  "Date/Publication": "2026-01-13 21:26:40 UTC",
  "RemoteUrl": "https://github.com/courtiol/isorix",
  "RemoteRef": "HEAD",
  "RemoteSha": "35fb6a7b0be9d3140a6f235e433afe03bdd1db85",
  "RemoteSubdir": "IsoriX",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-13 08:39:14 UTC",
    "User": "root"
  },
  "Author": "Alexandre Courtiol [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-0637-2959>),\nFrançois Rousset [aut] (ORCID: <https://orcid.org/0000-0003-4670-0371>),\nMarie-Sophie Rohwaeder [aut],\nStephanie Kramer-Schadt [aut] (ORCID:\n<https://orcid.org/0000-0002-9269-4446>)",
  "Maintainer": "Alexandre Courtiol <alexandre.courtiol@gmail.com>",
  "MD5sum": "acabb5d22b38184e025836d6fa92fb15",
  "_user": "courtiol",
  "_type": "src",
  "_file": "IsoriX_0.9.4.9000.tar.gz",
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  "_sha256": "a860e44ec4c8cd6a5c5d2c5fef59a2d4307009520f4807103434847c76d1c1c2",
  "_created": "2026-05-13T08:39:14.000Z",
  "_published": "2026-05-22T09:52:12.425Z",
  "_distro": "noble",
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    "author": "Alexandre Courtiol <alexandre.courtiol@gmail.com>",
    "committer": "Alexandre Courtiol <alexandre.courtiol@gmail.com>",
    "message": "Bump version\n",
    "time": 1768339600
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    "name": "Alexandre Courtiol",
    "email": "alexandre.courtiol@gmail.com",
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      "package": "grDevices",
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      "package": "utils",
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  "_usedby": 0,
  "_updates": [
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      "n": 14
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      "name": "v0.9.4",
      "date": "2026-01-13"
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    "uuid": 7499666,
    "type": "user",
    "name": "Alexandre Courtiol",
    "description": "Quantitative wildlife biologist at Leibniz-IZW Berlin / Rstats lecturer at FU Berlin / Rstats consultant. R & LaTeX fulfill 99% of my coding needs!"
  },
  "_downloads": {
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/IsoriX"
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  "_mentions": 1,
  "_devurl": "https://github.com/courtiol/isorix",
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.json",
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    "extra/readme.md",
    "manual.pdf"
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  "_homeurl": "https://github.com/courtiol/isorix",
  "_realowner": "courtiol",
  "_cranurl": true,
  "_releases": [
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      "version": "0.4-1",
      "date": "2016-09-11"
    },
    {
      "version": "0.5",
      "date": "2017-04-12"
    },
    {
      "version": "0.6",
      "date": "2017-07-08"
    },
    {
      "version": "0.7",
      "date": "2017-08-14"
    },
    {
      "version": "0.7.1",
      "date": "2018-04-05"
    },
    {
      "version": "0.8.1",
      "date": "2018-08-29"
    },
    {
      "version": "0.8.2",
      "date": "2020-09-16"
    },
    {
      "version": "0.8.3",
      "date": "2022-09-12"
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    {
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      "date": "2022-09-22"
    },
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      "date": "2023-09-26"
    },
    {
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      "date": "2023-11-14"
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    "cellSize",
    "create_aliens",
    "crs",
    "crs<-",
    "downloadfile",
    "ext",
    "ext<-",
    "extract",
    "get_ranPars",
    "getelev",
    "getOption_IsoriX",
    "getprecip",
    "gpar",
    "grid.text",
    "isofind",
    "isofit",
    "isomultifit",
    "isomultiscape",
    "isoscape",
    "layer",
    "levelplot",
    "lpolygon",
    "options_IsoriX",
    "plot",
    "points",
    "polys",
    "prepcipitate",
    "prepraster",
    "prepsources",
    "rast",
    "RdBuTheme",
    "readRDS",
    "saveRDS",
    "saveRDS_IsoriX",
    "shift",
    "values",
    "vect",
    "xyplot"
  ],
  "_datasets": [
    {
      "name": "AssignDataAlien",
      "title": "Simulated assignment dataset",
      "object": "AssignDataAlien",
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    },
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      "table": true,
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      "object": "AssignDataBat2Rev",
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      "title": "Assignment datasets for bat species",
      "object": "AssignDataBatRev",
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      ],
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      "table": true,
      "tojson": true
    },
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      "title": "Simulated calibration dataset",
      "object": "CalibDataAlien",
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        "lat",
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        "var_source_value",
        "n_source_value",
        "lat",
        "long",
        "elev"
      ],
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      "table": true,
      "tojson": true
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      "title": "Hydrogen delta values in precipitation water, Germany",
      "object": "GNIPDataDE",
      "class": [
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      ],
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        "lat",
        "long",
        "elev",
        "year",
        "month",
        "source_value"
      ],
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      "table": true,
      "tojson": true
    },
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      "title": "Hydrogen delta values in precipitation water (aggregated per location)",
      "object": "GNIPDataEUagg",
      "class": [
        "data.frame"
      ],
      "fields": [
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        "mean_source_value",
        "var_source_value",
        "n_source_value",
        "lat",
        "long",
        "elev"
      ],
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      "table": true,
      "tojson": true
    },
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      "title": "Colour palettes for plotting",
      "object": "isopalette1",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "isopalette2",
      "title": "Colour palettes for plotting",
      "object": "isopalette2",
      "class": [
        "character"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "IsoriX-package",
      "title": "Isoscape Computation and Inference of Spatial Origins using Mixed Models",
      "topics": [
        "IsoriX-package",
        "IsoriX"
      ]
    },
    {
      "page": "AssignDataAlien",
      "title": "Simulated assignment dataset",
      "topics": [
        "AssignDataAlien"
      ]
    },
    {
      "page": "AssignDataBat",
      "title": "Assignment datasets for bat species",
      "topics": [
        "AssignDataBat",
        "AssignDataBatRev"
      ]
    },
    {
      "page": "AssignDataBat2",
      "title": "Assignment datasets for bat species",
      "topics": [
        "AssignDataBat2",
        "AssignDataBat2Rev"
      ]
    },
    {
      "page": "CalibDataAlien",
      "title": "Simulated calibration dataset",
      "topics": [
        "CalibDataAlien"
      ]
    },
    {
      "page": "CalibDataBat",
      "title": "Calibration datasets for bat species",
      "topics": [
        "CalibDataBat",
        "CalibDataBatRev"
      ]
    },
    {
      "page": "CalibDataBat2",
      "title": "Calibration datasets for bat species",
      "topics": [
        "CalibDataBat2",
        "CalibDataBat2Rev"
      ]
    },
    {
      "page": "calibfit",
      "title": "Fit the calibration model (or load parameters from calibration done outside IsoriX)",
      "topics": [
        "calibfit",
        "print.CALIBFIT",
        "summary.CALIBFIT"
      ]
    },
    {
      "page": "CALIBFIT-class",
      "title": "Class CALIBFIT",
      "topics": [
        "CALIBFIT-class"
      ]
    },
    {
      "page": "CountryBorders",
      "title": "Borders of world CountryBorders",
      "topics": [
        "CountryBorders"
      ]
    },
    {
      "page": "create_aliens",
      "title": "Simulate datasets for calibrations or assignments",
      "topics": [
        "create_aliens"
      ]
    },
    {
      "page": "downloadfile",
      "title": "Download files and check their binary integrity",
      "topics": [
        "downloadfile"
      ]
    },
    {
      "page": "ElevRasterDE",
      "title": "The raster of elevation for Germany",
      "topics": [
        "ElevRasterDE"
      ]
    },
    {
      "page": "getelev",
      "title": "Download an elevation raster from internet",
      "topics": [
        "getelev"
      ]
    },
    {
      "page": "getprecip",
      "title": "Download rasters of monthly precipitation from internet",
      "topics": [
        "getprecip"
      ]
    },
    {
      "page": "GNIPDataDE",
      "title": "Hydrogen delta values in precipitation water, Germany",
      "topics": [
        "GNIPDataDE"
      ]
    },
    {
      "page": "GNIPDataEUagg",
      "title": "Hydrogen delta values in precipitation water (aggregated per location)",
      "topics": [
        "GNIPDataALLagg",
        "GNIPDataEUagg"
      ]
    },
    {
      "page": "isofind",
      "title": "Infer spatial origins",
      "topics": [
        "isofind",
        "print.ISOFIND",
        "summary.ISOFIND"
      ]
    },
    {
      "page": "ISOFIND-class",
      "title": "Class ISOFIND",
      "topics": [
        "ISOFIND-class"
      ]
    },
    {
      "page": "isofit",
      "title": "Fit the isoscape models",
      "topics": [
        "isofit",
        "print.ISOFIT",
        "summary.ISOFIT"
      ]
    },
    {
      "page": "isomultifit",
      "title": "Fit isoscape models per strata (typically time interval such as months)",
      "topics": [
        "isomultifit"
      ]
    },
    {
      "page": "isomultiscape",
      "title": "Predicts the average spatial distribution of isotopic values over months, years...",
      "topics": [
        "isomultiscape"
      ]
    },
    {
      "page": "isopalette2",
      "title": "Colour palettes for plotting",
      "topics": [
        "isopalette1",
        "isopalette2"
      ]
    },
    {
      "page": "IsoriX-defunct",
      "title": "Defunct and deprecated functions",
      "topics": [
        "Calibfit",
        "GetElev",
        "Isofit",
        "Isorix",
        "IsoriX-defunct",
        "Isoscape",
        "Isosim",
        "prepdata",
        "prepelev",
        "prepiso",
        "QueryGNIP",
        "queryGNIP",
        "RElevate",
        "relevate"
      ]
    },
    {
      "page": "isoscape",
      "title": "Predicts the spatial distribution of source isotopic values",
      "topics": [
        "isoscape",
        "print.isoscape",
        "summary.isoscape"
      ]
    },
    {
      "page": "ISOSCAPE-class",
      "title": "Class ISOSCAPE",
      "topics": [
        "ISOSCAPE-class"
      ]
    },
    {
      "page": "OceanMask",
      "title": "Mask of world oceans",
      "topics": [
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